Custom genomics and transcriptomics
Specialized in knowledge-intensive custom projects, including:
- de novo genome sequence assembly (from DNA extraction to annotated genome)
- animal, plant and microbial genomes
- up to chromosome and/or haplotype level
- complex mixed genomes, e.g. microbes/endosymbionts in eukaryotic hosts (such as ticks, wasps, mosquitoes)
- full-length organelle genome sequencing (e.g. mitochondrion, chloroplast, apicoplast)
- transcriptome sequencing (short and long read)
- differential gene expression analysis
- full length mRNA vaccine sequencing (complete, from 5’-end to 3’-end)
- transferRNA sequencing
- structural/functional genome annotation
- SNP calling
- structural variant calling
- methylation analysis
- full genome analysis of GMOs
- transgene characterization of transgenic animals and recombinant cell lines
- identification of contaminants in animal farming and plant breeding
- up to genus/species level; often including contaminant’s genome sequence
